I always format any portable media to be used with the PSR3000 using the keyboard. You wouldn't have thought this would make any difference but members of this forum have had difficulties with media formatted on PC's as FAT16 or FAT32.
Incidentally the "200" (approx) files per directory limit is due to the way Yamaha handle the file system using the keyboard display and applies to any media you use with the keyboard, no matter what the capacity, including external hard discs or CD drives.
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John Allcock